make all commands be repo-wide by default - refactor code in commands.py so that: if no pattern is given, the command will be repo-wide else it will work on the working dir - update the doc - fix the tests

#!/bin/sh

mkdir a
cd a
hg init
echo foo > b
hg add b
hg ci -m "b" -d "0 0"

chmod -w .hg

cd ..

hg clone a b
cd b
hg verify

cd ..

chmod +w a/.hg # let test clean up