fix traceback of extdiff after a merge
- files that comes from a different branch are marked as modified
but aren't present in the original manifest
- add a testcase for extdiff and for regular diff
% new file
applying patch from stdin
% chmod +x
applying patch from stdin
% copy
applying patch from stdin
a
a
% rename
applying patch from stdin
copyx
new
rename
% delete
applying patch from stdin
new
rename
% regular diff
applying patch from stdin
% copy and modify
applying patch from stdin
a
a
b
a
a
% rename and modify
applying patch from stdin
copy2: No such file or directory
a
a
b
c
a