Revert almost all of 5be434785317; add a test
Because of file copies, we should update the manifest dict only after
committing all files.
% init
% commit
adding base
% qnew mqbase
% qrefresh
% qdiff
diff -r 67e992f2c4f3 base
--- a/base
+++ b/base
@@ -1,1 +1,1 @@ base
-base
+patched
% qdiff dirname
diff -r 67e992f2c4f3 base
--- a/base
+++ b/base
@@ -1,1 +1,1 @@ base
-base
+patched