Fix file-changed-to-dir and dir-to-file commits (issue660). Allow adding to dirstate files that clash with previously existing but marked for removal. Protect from reintroducing clashes by revert. This change doesn't address related issues with update. Current workaround is to do "clean" update by manually removing conflicting files/dirs from working directory.

adding a
% check custom patch options are honored
requesting all changes
adding changesets
adding manifests
adding file changes
added 1 changesets with 1 changes to 1 files
1 files updated, 0 files merged, 0 files removed, 0 files unresolved
applying ../a.diff
Using custom patch
nothing changed